PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G198900.1
Common NameB456_005G198900, LOC105794844
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 463aa    MW: 51250.4 Da    PI: 8.8778
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G198900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-056080323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++Cgk F r  nL+ H r H
  Gorai.005G198900.1 60 CEICGKGFQRDQNLQLHRRGH 80
                        *******************88 PP
2zf-C2H213.50.00021134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.005G198900.1 134 WKCEKCSKRYAVQSDWKAHSKTC 156
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.24E-75780No hitNo description
Gene3DG3DSA:3.30.160.604.0E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0765880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035512099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.24E-7129154No hitNo description
SMARTSM00355130134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLETMAEEPV SNGFMQNPVP GSNNPPVAKR KRNLPGTPDP EAEVIALSPK TLMATNRFLC  60
EICGKGFQRD QNLQLHRRGH NLPWKLKQRT TKEVRKRVYV CPEKTCVHHH PSRALGDLTG  120
IKKHFYRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS RRDSFITHRA  180
FCDALAEETA RVNAASSMHS LATTNFSYQL MGNPLDTGMP QHFPSIFKTI SSNDETIDQT  240
RRGFSLWMGQ APQGHDSIGK SLQEIQQFGS LNSGSMYSDP LVSTSNPPAS DYQLNWVFGN  300
KVSSGNAEDQ LTSTSLPLNN NAKENGTQLV SIPSLFSTQH QSQQTPSFSM SATALLQKAA  360
QIGATSTDTS FLGSFGTKCS NSQIQDGSQY GDLYVSNTQT TTLGRDMENS ANDISTLNQL  420
QMYPPKRRYL QNEESGGGQT RDFLGVGVQQ AICHPSSING WI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479657.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-157IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D2PW720.0A0A0D2PW72_G
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-159C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]