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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G198900.1 | ||||||||
Common Name | B456_005G198900, LOC105794844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 463aa MW: 51250.4 Da PI: 8.8778 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 60 | 80 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Gorai.005G198900.1 60 CEICGKGFQRDQNLQLHRRGH 80 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gorai.005G198900.1 134 WKCEKCSKRYAVQSDWKAHSKTC 156 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.24E-7 | 57 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.076 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.489 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.9E-5 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.24E-7 | 129 | 154 | No hit | No description |
SMART | SM00355 | 130 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MLETMAEEPV SNGFMQNPVP GSNNPPVAKR KRNLPGTPDP EAEVIALSPK TLMATNRFLC 60 EICGKGFQRD QNLQLHRRGH NLPWKLKQRT TKEVRKRVYV CPEKTCVHHH PSRALGDLTG 120 IKKHFYRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS RRDSFITHRA 180 FCDALAEETA RVNAASSMHS LATTNFSYQL MGNPLDTGMP QHFPSIFKTI SSNDETIDQT 240 RRGFSLWMGQ APQGHDSIGK SLQEIQQFGS LNSGSMYSDP LVSTSNPPAS DYQLNWVFGN 300 KVSSGNAEDQ LTSTSLPLNN NAKENGTQLV SIPSLFSTQH QSQQTPSFSM SATALLQKAA 360 QIGATSTDTS FLGSFGTKCS NSQIQDGSQY GDLYVSNTQT TTLGRDMENS ANDISTLNQL 420 QMYPPKRRYL QNEESGGGQT RDFLGVGVQQ AICHPSSING WI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479657.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9ZWA6 | 1e-157 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A0D2PW72 | 0.0 | A0A0D2PW72_G | ||||
STRING | VIT_12s0028g03030.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-159 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G198900.1 |
Entrez Gene | 105794844 |
Publications ? help Back to Top | |||
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